News

Version 0.3 of SeqFeatR now available from CRAN.

The web-server uses version 0.3

About SeqFeatR

SeqFeatR provides user friendly methods for the identification of sequence patterns that are statistically significantly associated with features of the sequence.

For instance, given host HLA types (= features), SeqFeatR allows to identify viral immune escape mutations (= patterns).

Please cite:

Budeus B, Timm J, Hoffmann D (2016) SeqFeatR for the Discovery of Feature-Sequence Associations. PLoS ONE 11(1): e0146409.

How to use the tool:

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Type of sequences

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Nucleotides Amino acids

Input files

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Sequence alignment to analyse (FASTA):*

Download example input

Known epitopes (CSV):

Reference sequence (FASTA):

Known binding motifs (CSV):

Features

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One feature

Graphical output

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Method of calculation

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Fisher's exact test

Further options

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Email for results

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